PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 29620.4 Da PI: 6.4306 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82 | 1e-25 | 79 | 169 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++ + r + + tr gC+a++++ +++ gkw+vtk+++eH+H+l+ KHN30100.1 79 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHR-RDRVlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLM 169 6******************************************98882.2222458899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-22 | 79 | 169 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDHQSGQGFN SDDSDLDMQA EISEKPKKVD EFSKNLELCG SEDEMFVEIE QPLANISTDI 60 EAVEPFIGME FNSREEAREF YIAYGRRIGF TVRIHHNRRS RVNNQVIGQD FVCSKEGFRA 120 KKYVHRRDRV LPPPPATREG CQAMIRLALR DGGKWVVTKF VKEHTHKLMS PSKVPWRGSG 180 KHLVSEDEKD KRIRELSLEL YNERQKCKRR CAAYEEQLNM ILNDLEKHTE HISEKVAAVV 240 RSIREIEEEI SDSDGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028191875.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_028191876.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445IE87 | 0.0 | A0A445IE87_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A | ||||
STRING | GLYMA13G41920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 5e-40 | FAR1 family protein |
Publications ? help Back to Top | |||
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