PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 480aa MW: 52482.7 Da PI: 8.8324 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KHN30052.1 92 FICEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00056 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ KHN30052.1 169 WKCDKCSKKYAVQSDWKAHSKTC 191 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.11E-7 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.022 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 5.7E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 134 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 157 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.11E-7 | 164 | 189 | No hit | No description |
SMART | SM00355 | 150 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MIIHKTPNMG KDDEGFDVPK TMSNLTSASG EARASSGNRT EIGTDYSQQY FTPPPTQTQP 60 PLKKKRNLPG NPDPEAEVVA LSPKTLLATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRSSKDIIR KKVYVCPEPS CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARSVTG IVANSTTQPT 240 EAAGVVISSS SLHQDMIHAS NNNFPLKKEQ QGCIPHWLGQ PSPSSASSSF LFSHQDHHLH 300 ENPNPRGGPT LLPPPYHQTA PHMSATALLQ KAAQMGATMS KTGSMIRTHQ QQAHVSANAA 360 LNLSSRDHQM NPTPHDLLPF GNNKAVDNGV GVSPSLLHHV INSFSSSPFE GTFEDTFGGG 420 DAMTADEGGG GGAGGNNNEG LTRDFLGLRH LSHTDILNIA GVGNCMNSSQ HNQTRNPWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 165 | 226 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 165 | 226 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 131 | KLKQRSSKDIIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-146 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621596.1 | 0.0 | protein indeterminate-domain 11 | ||||
Refseq | XP_028186906.1 | 0.0 | protein indeterminate-domain 11-like | ||||
Swissprot | Q9LRW7 | 1e-141 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A445IEL6 | 0.0 | A0A445IEL6_GLYSO; Protein indeterminate-domain 11 isoform A | ||||
TrEMBL | I1M5B5 | 0.0 | I1M5B5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G42550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-118 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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