PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30026.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 450aa    MW: 49501.2 Da    PI: 6.5965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30026.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.4e-08358398954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  KHN30026.1 358 ARQRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 398
                 69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-14355414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11357411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5358398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-4371403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDGLSWDASS VQLVANTPIL WSTQPQDLEG GYLHSMPHLC SSALNQTGYP YPCSEKVRGM  60
VHSSTTCEMM SMMPNTNLPQ RITATMPVKS VVAAGASWEE TLTSQSRPSL SANMNQTSNY  120
VADFNMAHQQ QHQHLINGTQ NGKATTCSLD QSLDCLLSAT NNSNTDMSVQ DDGISMILSD  180
CRNLWNNFSY GSVANTSGES ESNASINARN SDMRYPSVSE LDESVSQSFS DQYLSQGRVI  240
DSSEVICTKR SSSSGFSIAQ NSSATELGGF TLISETSPKS KRPRWDHKYP GSSNINFQQP  300
NSSVTPSFEE PDPEAIAQMK EMIYRAAAFR PVNLGLEAVE KPKRKNVRIS SDPQTVAARQ  360
RRERISERIR VLQKIVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGN KLDTMNCPPT  420
NIAFSFNPSF PIQTHFPIQN PSSHIQYSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188943.10.0transcription factor bHLH87-like
RefseqXP_028188944.10.0transcription factor bHLH87-like
SwissprotQ8S3D22e-84BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A445IEW80.0A0A445IEW8_GLYSO; Transcription factor bHLH87
STRINGGLYMA13G42900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]