PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29960.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 322aa    MW: 36775.1 Da    PI: 7.186
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29960.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22e-42180256177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q
  KHN29960.1 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 256
                 6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-35175242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.753178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.63E-40179260IPR004333Transcription factor, SBP-box
PfamPF031102.9E-32181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESWSYVPEE KGYLFSDEMD FSLDAFMRSR KALVEWDNKS NFVEKDGFNS DREVVRSMEF  60
VDLGFPDLLQ KSFHGSQPLE TSSYELDSNN SSKRGNSSPH VIALDSSMGE EESDSKHLSS  120
LVESKTHDSS LIDLKLGRLA DCKGASSDKV AKEGFTLTSI HPTTLWKRAR TSSLPAQAPV  180
CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS  240
CRRRLAGHNE RRRKPQFDYV TGKQHKILQS YQELFSIKHS LSSEHAATVD LFQLSSHLQR  300
VEQQRNSVLV KWENEDYCFP TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29172254284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520128.10.0squamosa promoter-binding-like protein 6
RefseqXP_025981133.10.0squamosa promoter-binding-like protein 6
RefseqXP_025981134.10.0squamosa promoter-binding-like protein 6
RefseqXP_028203744.10.0squamosa promoter-binding-like protein 6 isoform X2
SwissprotQ94JW82e-59SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLA0A445LN590.0A0A445LN59_GLYSO; Squamosa promoter-binding-like protein 6 isoform A
TrEMBLK7K7W50.0K7K7W5_SOYBN; Uncharacterized protein
STRINGGLYMA02G13371.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.18e-62SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]