PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29940.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 335aa    MW: 36740.6 Da    PI: 7.2739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29940.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15e-164695255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  KHN29940.1 46 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 95
                899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1842116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-2343116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0444494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-154699No hitNo description
PfamPF000102.3E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1250100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRAGKGSQEE DEYEEEEFGS SKKQGTSSAP NTNKDGKAID KASAIRSKHS VTEQRRRSKI  60
NERFQILRDL IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK YEGSYQGWGQ EPSKLMPWRN  120
SHWRVQSFAG QPTAVKNGLG PVSPFPGKFD ESNVSISPTM LNGSQNTIDP DQSRDIVNKT  180
AERQPDLVSK GIPLPLAMHA NMSVPVRSDG VLAHPLQGTV SNAQSTECPT TSEPQNQQDE  240
LSVEGGTISI SSAYSQGLLN NLTQALQSAG LDLSQASISV QINLGKRANK GLNCGTSSLK  300
HHDNPSSNNQ TIAHFRDAGS GEDSDQAQKR MKTYK
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935380.0BT093538.1 Soybean clone JCVI-FLGm-24O13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574463.10.0uncharacterized protein LOC100816055 isoform X1
RefseqXP_028204027.10.0transcription factor BIM2-like isoform X2
SwissprotQ9CAA41e-118BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A445LNY30.0A0A445LNY3_GLYSO; Transcription factor BIM2 isoform B
TrEMBLI1JEK70.0I1JEK7_SOYBN; Uncharacterized protein
STRINGGLYMA02G13670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-115BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]