PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29924.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 551aa    MW: 59262.7 Da    PI: 5.9747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29924.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09367415355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  KHN29924.1 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                 58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSDKEKFEVD RNEDHVSYSS GMHSDWRFGG SNLANSSVGF VGLGNNSMNV SRGDLIGSSS  60
CSSASMVDSL SPNYWENPTS SQKLGFCDIN NVHNNGGSSS TVAIRKDGFG FGRVGQDHHG  120
TLEMGWNHAN SMLPNGPVMF PHSLSQFPTD SGFIERAARF SCFSGGNFGD MVNSYGIAQS  180
MGLYGARDAI AGHGLKSVIA GGQSQGGDMN VVEDVPPSVE HLVAAKGSPL KSDRRSEGHV  240
IFQDEGKQSL VRNANESDRA ESSDDGGGQD DSPMLEGTSG EPSSKGLNSK KRKRSGRDGD  300
NDKANGAQEL PSEGAKGNSE NQQKGDQQPI STANKACGKN AKLGSQASDP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFNIEGLL AKDILQQRPD PSTALGFPLD MSMAFPPLHP PQPGLIHPVI  480
PNMTNSSDIL QRTIHPQLAP LNGGFKEPNQ LPDVWEDELH NVVQMSFATT APPTSQDVDG  540
TGPASQMKVE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574971.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574972.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574973.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574974.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574975.10.0transcription factor bHLH49 isoform X1
RefseqXP_014622274.10.0transcription factor bHLH49 isoform X1
RefseqXP_028204192.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204197.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204201.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204208.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204215.10.0transcription factor bHLH49-like isoform X1
TrEMBLA0A445LN480.0A0A445LN48_GLYSO; Transcription factor bHLH49 isoform A
TrEMBLI1JEM40.0I1JEM4_SOYBN; Uncharacterized protein
STRINGGLYMA02G13860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-108bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]