PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 19467.8 Da PI: 7.1456 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g KHN29762.1 27 EYRGVRQQT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 76 69****988.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.80E-32 | 26 | 86 | No hit | No description |
SMART | SM00380 | 1.5E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.339 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKVQPLTSVH QKGPTRGKGG PQNACCEYRG VRQQTWGKWV AEIREPKKRT RLWLGSFATA 60 EEAAMAYDEA ARRLYGPDAY LNLPHLQPSV HLIHQRLQEL KRNSVVSQSS SSSSNDPKAE 120 IQNVDSKNHG EDENPPKDVQ TSSEEVLGDL QEKPQIDLHE FLQQMGILKE ER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 28 | 84 | 6 | 63 | ATERF1 |
3gcc_A | 1e-17 | 28 | 84 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29762.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235046 | 1e-127 | AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence. | |||
GenBank | AC235452 | 1e-127 | AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553420.1 | 2e-99 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_028217981.1 | 2e-99 | dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 3e-55 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A0B2RD31 | 1e-125 | A0A0B2RD31_GLYSO; Dehydration-responsive element-binding protein 2F | ||||
STRING | GLYMA19G32380.1 | 6e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-43 | ERF family protein |
Publications ? help Back to Top | |||
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