PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 201aa MW: 22465.5 Da PI: 9.599 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 64 | 97 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk + KHN29722.1 64 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 97 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.993 | 58 | 94 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-19 | 58 | 109 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 58 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.8E-16 | 62 | 97 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.43E-13 | 63 | 100 | No hit | No description |
Pfam | PF00320 | 2.7E-17 | 64 | 97 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 64 | 89 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
DSSSECGHHN VSLYKIEDEE NKRDHDYEKW MSSTARLTRK MMRLPSTSSD LATKKALNNI 60 TRVCADCNTT STPLWRSGPN GPKSLCNACG IRQRKARRAM AEAVNGFAPS VNSSSTKIRV 120 HHKEKKSRTN HFARFRLKCK LATTSTAEGT SQQENVKIDL NDFGLSLRDS SALKQQVFPI 180 MDEVAQAAML LMDLSCGFVY C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29722.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578078.1 | 1e-149 | putative GATA transcription factor 22 | ||||
Refseq | XP_028226996.1 | 1e-149 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A445KVV2 | 1e-148 | A0A445KVV2_GLYSO; Putative GATA transcription factor 22 | ||||
TrEMBL | K7KI74 | 1e-148 | K7KI74_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G05431.1 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-24 | cytokinin-responsive gata factor 1 |
Publications ? help Back to Top | |||
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