PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29236.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 256aa    MW: 28657.7 Da    PI: 6.9552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29236.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08144184954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  KHN29236.1 144 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 184
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-10141189No hitNo description
Gene3DG3DSA:4.10.280.105.3E-12141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDTNTSTLFT NVNSTWNLEK METNEQQQQH DDHSIILQVQ DPMGSGIWPI NNYHNLLQMH  60
QTPNTTTSSM VIVPPSSSSG FLGDILGVHH NLEEDEEPEE ELGAMKEMMY KIAAMQPVDI  120
DPPTIRKPKR RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAIRY  180
VKFLKRQIRL LQSIPQPSRQ PPQCIGVAST TPHASTLLLA PSSDWPFAPN VLPRSTAVSA  240
SMDMSAGLGR RPCSCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1923741e-169KC192374.1 Phaseolus vulgaris cultivar BAT93 indehiscent-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243253.10.0transcription factor HEC3-like
TrEMBLK7L6Z70.0K7L6Z7_SOYBN; Uncharacterized protein
STRINGGLYMA08G16570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-46bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]