PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29208.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 450aa    MW: 49761.2 Da    PI: 6.6483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29208.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13378423655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L++l Pk+     k  s a++L +AveYIk+Lq
  KHN29208.1 378 SIAERVRRTRISERIKKLQDLFPKS----EKQTSTADMLDLAVEYIKDLQ 423
                 689*********************8....577*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14375438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11376427No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14377435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSVMYSPVLN YSDVEHQLRK NQDMDSSIGH PQQHCHQPNS GLLRYCSAPS SLLASLIDNT  60
IHGCVNEESF TSENHHHHQQ QQQQHYLPST SSEMETMLSK LLPSNNGWSN SEALQEFGGK  120
PVKQEIGESI PQEPPQQNGY SYGGSQLIYQ SQQIQGLPNG GSSSASGSAF DGSFGVVHSM  180
ASEDSIQSKM GIRNCSNLFR QKSSPAGFFS IENDLAALRE VGSFKADDVS NGLVTASTGG  240
LHSSHTFSSR PSSCLKRLPQ IAENGNESLE ENCDQSRNLV NDNGSSKCYI PSFTNELWES  300
SAFNAPKTEN EDEIMFSTSN ILESQEADFS FQNLGLTHHL SLPSSSTKMS SIEKFLQIQG  360
SVPCKIRAKR GFATHPRSIA ERVRRTRISE RIKKLQDLFP KSEKQTSTAD MLDLAVEYIK  420
DLQQKVKILS DCKAKCKCTS NEKHYTRTCA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29208.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2159410.0GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243949.10.0transcription factor bHLH130-like
TrEMBLA0A445JEZ50.0A0A445JEZ5_GLYSO; Transcription factor bHLH130 isoform A
STRINGGLYMA08G16190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-41bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]