PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 31420.9 Da PI: 7.3401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.7 | 9.8e-09 | 7 | 56 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+i +++ +k+L KHN29172.1 7 RKTQKADREKLRRDRLNEQFVELGNILDPD----RPKNDKATIIGDTIQLLKDL 56 6788999********************997....79*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-13 | 5 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 6 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.544 | 6 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.32E-6 | 7 | 61 | No hit | No description |
SMART | SM00353 | 7.8E-6 | 12 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDCSAARKTQ KADREKLRRD RLNEQFVELG NILDPDRPKN DKATIIGDTI QLLKDLTSQV 60 SKLKDEYATL NEESRELTQE KNDLREEKAS LKSDIGNLNN QYQQQLRTMF PWTAMDHSVM 120 MAPPSYPYPV PMAVPPGPIP MQPYPFFANQ HPAVISNPCS TYVPYLAPNT IVEQQSTQYV 180 SPPLHPCGRS NVSGKQESKS KSSRESKAEK NEDSNDVTTD LELKTPGSSA DQDLSSRQRK 240 SSKLSRRESS CTEGSSLGRC SSSRSVQDSS SSSVAASRKD NE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29172.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094437 | 0.0 | BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003531414.1 | 0.0 | transcription factor bHLH121 | ||||
Refseq | XP_014634451.1 | 0.0 | transcription factor bHLH121 | ||||
Refseq | XP_028243910.1 | 0.0 | transcription factor bHLH121 | ||||
Refseq | XP_028243911.1 | 0.0 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 6e-96 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A445JEW7 | 0.0 | A0A445JEW7_GLYSO; Transcription factor bHLH121 isoform B | ||||
TrEMBL | I1KTH2 | 0.0 | I1KTH2_SOYBN; Uncharacterized protein | ||||
STRING | XP_007133432.1 | 1e-174 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 8e-78 | bHLH family protein |
Publications ? help Back to Top | |||
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