PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29155.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 376aa    MW: 42777.4 Da    PI: 5.0403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29155.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.81.4e-8173662374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  +lLl+ Aeav++++  la+ ++++l++ +s +     ++Rla +ft+ L  + ++  +el +  ++s+     +++++ ++++++e+sP++kf+h+ta
  KHN29155.1   7 ADLLLTGAEAVEAQNWPLASDIIEKLNNASSLENgdGLLNRLALFFTQSLYYKSTN-APELLQCGAVST-----HTNAFCVFQVLQELSPYVKFAHFTA 99 
                 679**************************88765434689***********99998.666665444444.....457888999**************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIlea+eg+e +HiiDfdi++G+QWp+L+  La + ++  slR+T++   ++  ++++++tg+rL++fA++++ pf f+ l+++r ed++  eL   
  KHN29155.1 100 NQAILEATEGAEDLHIIDFDIMEGIQWPPLMVDLAMK-KSVNSLRVTAITV-NQRGADSVQQTGRRLKEFAASINFPFMFDQLMMEREEDFQGIEL--- 193
                 ***********************************98.5668*********.55789*****************************9999988777... PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellg 291
                  g +l+Vn+++  + ++++s sl +   ++L+ v +lsP++vv+ve+e      + s sF+e f+eal++y+al dsl+++l   +  e + +E+e++g
  KHN29155.1 194 -GQTLIVNCMI-HQWMPNRSFSLVK---TFLDGVTKLSPRLVVLVEEElfnfPRLKSMSFVEFFCEALHHYTALCDSLASNLWGSHkMELSLIEKEVIG 287
                 .99*******9.5667888899988...********************7553345999********************888866663777899****** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i + v +   er+er+     W+e + +  GFk vp+s+ + +qak l++ ++  gy v+ e+g l l+Wk+rpL+++S W+
  KHN29155.1 288 LRILDSVRQFPCERKERMV----WEEGFYSlKGFKRVPMSTCNISQAKFLVSLFG-GGYWVQYEKGRLALCWKSRPLTVASIWE 366
                 ***************9999....***997758***********************.89*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.4861347IPR005202Transcription factor GRAS
PfamPF035145.0E-797366IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEETSLADLL LTGAEAVEAQ NWPLASDIIE KLNNASSLEN GDGLLNRLAL FFTQSLYYKS  60
TNAPELLQCG AVSTHTNAFC VFQVLQELSP YVKFAHFTAN QAILEATEGA EDLHIIDFDI  120
MEGIQWPPLM VDLAMKKSVN SLRVTAITVN QRGADSVQQT GRRLKEFAAS INFPFMFDQL  180
MMEREEDFQG IELGQTLIVN CMIHQWMPNR SFSLVKTFLD GVTKLSPRLV VLVEEELFNF  240
PRLKSMSFVE FFCEALHHYT ALCDSLASNL WGSHKMELSL IEKEVIGLRI LDSVRQFPCE  300
RKERMVWEEG FYSLKGFKRV PMSTCNISQA KFLVSLFGGG YWVQYEKGRL ALCWKSRPLT  360
VASIWEPMAY LDDKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-371436726379Protein SCARECROW
5b3h_D7e-371436726379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532857.20.0nodulation-signaling pathway 2 protein
RefseqXP_028247136.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A445JEU80.0A0A445JEU8_GLYSO; Nodulation-signaling pathway 2 protein
TrEMBLK7L6R70.0K7L6R7_SOYBN; Uncharacterized protein
STRINGGLYMA08G15530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-46GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]