PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29117.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 184aa    MW: 20806.8 Da    PI: 7.5834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29117.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43e-28106164159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDgy+WrKYG+K+vk+s++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe
  KHN29117.1 106 MDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDRDDYSYVITTYEGVHNHE 164
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-3193166IPR003657WRKY domain
SuperFamilySSF1182902.48E-2698166IPR003657WRKY domain
PROSITE profilePS5081129.964101166IPR003657WRKY domain
SMARTSM007742.2E-30106165IPR003657WRKY domain
PfamPF031064.3E-22107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDFYFGNSPP YPNNYAHNSL NMALSSPEIA LSDYLMLDDY VDHQDSRSSQ STESSEKATF  60
SDATHGFSTG ATSKNNNINC KNGINENKGG VGPRIAFRTK SELEIMDDGY KWRKYGKKSV  120
KSSPNLRNYY KCSSGGCSVK KRVERDRDDY SYVITTYEGV HNHESPFTTY YSPISFVHSD  180
TTFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2494166274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957010.0BT095701.1 Soybean clone JCVI-FLGm-15I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243857.11e-136probable WRKY transcription factor 50
TrEMBLA0A445JEK31e-134A0A445JEK3_GLYSO; Putative WRKY transcription factor 51
STRINGGLYMA08G15050.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-41WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]