PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29106.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 236aa    MW: 25991 Da    PI: 7.619
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29106.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.14.1e-5629124297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianvsrimk++lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl++yre+egek
  KHN29106.1  29 KEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEK 124
                 89*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-5426134IPR009072Histone-fold
SuperFamilySSF471135.43E-4031132IPR009072Histone-fold
PfamPF008083.0E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-186280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-188199No hitNo description
PRINTSPR006152.3E-18100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTGTKRNQIT TSPVGSPTSG NISDSYSSKE QDRFLPIANV SRIMKRALPA NAKISKEAKE  60
TVQECVSEFI SFITGEASDK CQREKRKTIN GDDLLWAMTT LGFENYVGPL KLYLNNYRET  120
EGEKSSTSMA KQEELHSPTH QHQTNIDGVV EINKLLPHSV AAATKASDFN NTTFSAGGFY  180
SVGPHQVTAP KSFTEMGGLN GYRESSIAQS ALSADQIQDA SGNRMMPPNL RYRVEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4829119292Transcription factor HapC (Eurofung)
4g92_B7e-4829119292Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-147AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532849.11e-179nuclear transcription factor Y subunit B-10 isoform X1
RefseqXP_028243842.11e-179nuclear transcription factor Y subunit B-10-like isoform X1
TrEMBLA0A445JEJ61e-178A0A445JEJ6_GLYSO; Nuclear transcription factor Y subunit B-3
TrEMBLK7L6M61e-178K7L6M6_SOYBN; Uncharacterized protein
STRINGGLYMA08G14931.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-64nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]