PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 28111 Da PI: 4.377 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.6 | 2.3e-21 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge KHN29077.1 13 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 63 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.07E-35 | 12 | 72 | No hit | No description |
SMART | SM00380 | 1.5E-39 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-24 | 13 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 13 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-15 | 14 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MKHAGTAAKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDNAAFKL 60 RGEFARLNFP HLRHHGAFVF GEFGDYKPLP SSVDSKLQAI CESLAKQEEK PCCSVEDVKP 120 VIHAAELAEV ESDVAKSNAE YVYPEFEDFK VEHENPMFSG ESSSPESTEV ESDVAKSNAE 180 YVYPEFEDFK VENENPMLSS SVSGESSSPE SGVTFLDFSD FSDSNNQWDE MENFGLEKFP 240 SVEIDWEAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 12 | 70 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY296651 | 0.0 | AY296651.1 Glycine max DREB2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345278.1 | 1e-135 | ethylene-responsive transcription factor | ||||
Refseq | XP_028243789.1 | 1e-135 | ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A445JEC5 | 1e-134 | A0A445JEC5_GLYSO; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | Q4QYE1 | 1e-134 | Q4QYE1_SOYBN; DREB2 | ||||
STRING | GLYMA08G14600.1 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 6e-49 | related to AP2 4 |
Publications ? help Back to Top | |||
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