PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28921.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 521aa    MW: 58102.9 Da    PI: 5.7195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28921.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-13326372354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h + E++RR+++N ++  Lr l+P++     +K + a+++  A++YI++L
  KHN28921.1 326 TKHFATEKQRREQLNGKYKILRNLIPSP-----TKTDRASVVGDAIDYIREL 372
                 79**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.2E-12321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14321385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-11326372No hitNo description
SMARTSM003531.5E-10329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSTGDRPKMH DQTGCFDPNT TGESVPSLKD NFPQTLPPSS PMVVVGNTTT NSINNSLEEN  60
LRLSVEELSC NHHNPQHQQD HVSTYASGVT ATSIEIPLPQ HLGLNMGNSY INNNNNMDNH  120
LVQEVIDAFP YQQSTWDPTI VQELQDMAYA NHTEQTQQQQ QNEQQFQQFE TQNCSQSYNN  180
PSSILDPPYP SPDLLNLLHM PRCSASSLLT NPSICLTNPT QNTPNFQNPM AFLGDLPIGS  240
ENTSASSVLY DPLFHLNLPP QPPALRELFQ SLPRGYSLPT NSRNGSLFGG GDEMEGDGSQ  300
LDMGVLEFNR VTLTPSVGKG RRGKATKHFA TEKQRREQLN GKYKILRNLI PSPTKTDRAS  360
VVGDAIDYIR ELIRTVNELK LLVEKKRYAK DRCKRPKTEE DAAESCNIKP FGDPDGGIRT  420
SWLQRKSKDS EVDVRIIDDD VTIKLFQRKK INCLLFVSKV LDELQLELHH VAGGHVGEYC  480
SFLFNSKIME GSSVYASAIA NRVIDVLDSQ YAAAVPHTNS Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358830.0AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585047.10.0transcription factor bHLH89
RefseqXP_014634261.10.0transcription factor bHLH89
RefseqXP_028247143.10.0transcription factor bHLH89-like
TrEMBLA0A0B2R4110.0A0A0B2R411_GLYSO; Transcription factor bHLH89 isoform A
TrEMBLK7L5M60.0K7L5M6_SOYBN; Uncharacterized protein
STRINGGLYMA08G09421.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-76bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]