PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28849.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 538aa    MW: 60915 Da    PI: 8.4884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28849.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11352396554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  KHN28849.1 352 HMISERRRREKLNENFQALRALLPPG-----TKKDKASILIAAKETLRSL 396
                 8899********************97.....8***********9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-14344411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.221347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-10349400No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14351411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8352396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MHPMESVFSL SVAARTDFIQ FLVQSLGCSY ICLWAYDSIS PNRLSFLDGI YNVRNNQASS  60
SLGSVQAQQL FSQFRTLTFD VNDDRVPGLA FRNQRPYLEL QQLELLRLAS TEIQIQFFQE  120
ARIKTAVFMG CNKGEIELGF LNMSQVDIQT ALRSLFPEDF STRVQSQQID QNPPTSSSSS  180
LRSISTGSPE YSSLIFSIPG TSQPHFPPET LGASSSRVVP TMQPVPNSPH QRAIDIQALT  240
EVPSLTQFPT PETEHDAIMR AILHVISPTT SHHHEQQHHQ NLPYSNNSLP VVRPDASAFQ  300
RYRQDLGSNM ASNFRRQSLM KRSLVFFRNM NFMRMRERVQ ATSRPTNTQL HHMISERRRR  360
EKLNENFQAL RALLPPGTKK DKASILIAAK ETLRSLMTEV DKLSNRNQGL TSLLPAKEST  420
AEETKVASLS PNERLSVRIS HVPESSTSEE RMVELQVNVR GQVSQTDLLI RLLKFLKLAH  480
HVSLVSMDAN THIAEGNNAL HQLTFRLRII QGSEWDESAF EEAVRRVVAD LAQYQMDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRE
2356361RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-100AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202612.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A0B2R9N50.0A0A0B2R9N5_GLYSO; Putative transcription factor bHLH041
STRINGGLYMA15G18580.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-54bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]