PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN28698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 22068.7 Da PI: 7.5593 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.5e-11 | 85 | 132 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq KHN28698.1 85 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 132 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-18 | 79 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-10 | 79 | 136 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-18 | 81 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-8 | 85 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 87 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MLNIAHKKPR HAAGEEEESA KGASTTNAVD EGCGDGKRVK TSESGKGEGE SCSGKPAKQS 60 GKPPSEPPKQ DYIHVGARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV 120 LDEIINYIQS LQRQVEFLSM KLEAVNSRIA PGIEVFPPKD FDQQTFDTTG MPFASQATRD 180 YSRGSSPEWL HMQVGDGFER AT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN28698.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146684 | 1e-114 | BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519223.1 | 1e-136 | transcription factor BHLH089 | ||||
Refseq | XP_028193956.1 | 1e-136 | transcription factor BHLH089-like | ||||
Swissprot | Q69WS3 | 1e-74 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A0B2R9Q8 | 1e-148 | A0A0B2R9Q8_GLYSO; Transcription factor BPE | ||||
STRING | GLYMA02G02934.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-80 | BIG PETAL P |
Publications ? help Back to Top | |||
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