PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28608.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 474aa    MW: 52174.3 Da    PI: 7.1442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28608.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063654031154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  KHN28608.1 365 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 403
                 5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11364421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-7364407No hitNo description
SMARTSM003530.0049365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSDDQFQASG NWWETARSVR FESRESQSSS GLTNNIGSYA ASWQQHQQHD MATRSSSMDN  60
NSVSGGSSVV FHDQKQLQVH DSSPAATSTN DPNFHMMALG LSSQAMDWSQ ASLPLRGEKG  120
SENSFRSMLQ ENLSSSGTNF QQQECGSNSI GLSQHHHHHH QQVHWKPEKL FSAESSSNEF  180
KRGFSLDQTQ FSPQYSSGDS TVTSQGLPCS FQIDYVGNPS SILQGLLGQE SNNNQQQPHQ  240
GGGAMNFPYS AASYGLNSNI ELVPSWSKVP QFLRASPPKQ PPNNQLHFTN NAPFWNANSE  300
PAIKDSRSNF IPSLQPPFPT SNFDVQSKNI SEVRDSGGVV KKSGSEAAPK RPRNETPSPL  360
PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVTVL STPYMKSGAP  420
IQHQQSSGKS KESEGPKQDL RSRGLCLVPV SSTFPVTHEP TVEYWTPTFG GTYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-74AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192987.10.0transcription factor bHLH123-like
TrEMBLA0A0B2R9H40.0A0A0B2R9H4_GLYSO; Transcription factor bHLH123
STRINGGLYMA12G17630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-79bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]