PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28448.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 418aa    MW: 46159 Da    PI: 7.3439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28448.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12236281555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  KHN28448.1 236 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 281
                 99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17229291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-13229285No hitNo description
PROSITE profilePS5088817.39231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16233290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MQPCSREMQG LNSLLNSSSQ ISLQDLHNHT TNQIQNSHMN HQHHHQQQQQ HQQQQHQLAH  60
FDSTSHDDFL EQMLSSCSWT DLNHNKPLLW DPNTPNDIKP PDETTPSNNN DDATANVVFP  120
SFDEHSTLAS KFRNHQISSN NNAPKNAAAA AGGEASVQAL YNGFAGSLHG AGQSSNQTQH  180
FQNPQGSSNP MQGQNFGAVP AGGGSATNQS GAAAGGAPAQ PRQRVRARRG QATDPHSIAE  240
RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP  300
LVADMYSEVI TYYYTNALPF SFTAMYTTNK HSDEAWFLWK WRKIFGIQHN NLSSSDQSAV  360
SDFAKKGGSD TKIETEEGKE STQQQTCIWG KNGGRMLIVS GNQKLLRPRE MCLWAAQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667422e-75AC166742.25 Glycine max cultivar Williams 82 clone gmw1-45m6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533887.21e-174transcription factor bHLH66
RefseqXP_028180903.11e-174transcription factor bHLH66-like
TrEMBLA0A0B2R9330.0A0A0B2R933_GLYSO; Transcription factor bHLH66
STRINGGLYMA09G14380.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-25LJRHL1-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]