PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN28216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 1051aa MW: 117018 Da PI: 9.1387 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.4 | 4.4e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ lg+t +qV+ +F +R + ++ KHN28216.1 69 KRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALLGVTVTQVRDFFNAQRSRVRR 125 799**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.203 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-7 | 68 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-6 | 69 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.02E-6 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 1.7E-4 | 225 | 310 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1051 aa Download sequence Send to blast |
MDAWNEDFSE LEIGSSTESF QKFLVSQREL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELRE ISALLGVTVT QVRDFFNAQR 120 SRVRRSVQLS RERVLSSNSC EEPHDDQINS DPMRPINPTP LNSAGLSNTE EASCSTQEVT 180 LSDLDDSDKQ FVDSIFSLMQ KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL 240 SKAAVEEQTS VLLLVLKVLC HLPLHKAVPM HISAILQSVN KLRFYRTSDI SNRARVLLSK 300 WSKLFARNHV IKKPNGVKTS SDGHKEMMLS RRQACILSLF CAQFVGTSFL NYCDLYFCSI 360 GQLMGSESWH SNIDVPEDIL ALSSECSNNF RKIGSPQGVK LLPPSLDDSN KKSTLGVSSS 420 QSRERRKVQL VEQPGQKSVS RSSQVTRAGP VSQGRPMSAD DIQKAKMRAL FMQSKYGKSG 480 SKESSETKID SPYKQPQTNP ASIAACSSKV PTPPKIEENE KPLLLASKAT NKLEASYSKP 540 KMDVKEPLWE KCKRVQIPWK TPAEVELKDT WRVGGGENSK EVEVQRNRNR RDKEIIYKTV 600 QEMPPNPKEP WDLEMDYDDT LTLEIPIEQL PDGDADIAIS PNHVATHSVQ GVASTSSTSV 660 ATAEPDLELL AVLLKNPELV FALTSGQGGS IPSEETVKLL DMIKSGGVNL GLSENTNGSY 720 GTSVKAPEKV EVSLPSPTPL SDPRTSGWSS EASKNPFSRQ SLAPDRITQK HTAVATTNLL 780 SQIPITVTTV RQQPTVVVPS SRHLTSISVS PYSLPQATNV IPEKPPPLGH VQTSSDVGLT 840 MKKNLITANA SSVNFTGTHS TLAMRGDGTN YVKPVPNLSV QHEGLSNSFP QPFMPPSPTP 900 SHSASQQQRH QHLAQEVHYT EPPYRNPGRS YPPQIEKSDH GSDNMWRVRQ DHVSSSYLSQ 960 RNHNNNYNTI VGGSRQSGFY DRNNHARGEF ESWSPENSPT RNPRYAPGRN YPESRMNHGR 1020 NHRPEWSRQR GSSGHWDPGR QGNRKWHDQR R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN28216.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235349 | 0.0 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028226223.1 | 0.0 | homeobox protein LUMINIDEPENDENS-like | ||||
Swissprot | Q38796 | 1e-163 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A0B2R2D8 | 0.0 | A0A0B2R2D8_GLYSO; Homeobox protein LUMINIDEPENDENS | ||||
STRING | GLYMA03G36970.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-136 | HB-other family protein |
Publications ? help Back to Top | |||
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