PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN28145.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 479aa MW: 51885.3 Da PI: 7.2579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN28145.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	127	185	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ KHN28145.1 127 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKN 185 78999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	125	184	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	128	185	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	131	185	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	133	169	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MSEVKDPAIK LFGRTISLTH THINDSSSSS APARAPSSSS SPREVTSSAT QQQHEPEEPS 60 RKELTSSQDD DGSHQTTEDL KSPTTSSGIF ENPKTPSPET ETSVPKSSTN GEQSETSASD 120 EKTPKKPDKV LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR 180 RKNKNFPATA SHYRHLMFPE GLQGATLNAP NGLHNAVLGN GAAVLTFGPD SPLCDTMASM 240 LNIAERAQSC VPNGFQATEP NSFVSYRKEE DGSTSGHSTG VSVATTSTSS HSGSHESVDK 300 RVEGFTPQLP YFPSGPWPYP MPPPTFCPPG YPLSFYTTPA YWGCMPPSWN NNISSISPQS 360 SVNNSVSVLT LGKHSRDGNI IAPSNSQREM HDMEHKSSEH NVLIPKTLRI DDPSEAAKSS 420 ISMWSKLGIK DDKAGSGGLF KAFPSSKGND MNHHMVEASP LLQANPAALS RSLTFREQT

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MSEVKDPAIK LFGRTISLTH THINDSSSSS APARAPSSSS SPREVTSSAT QQQHEPEEPS  60
RKELTSSQDD DGSHQTTEDL KSPTTSSGIF ENPKTPSPET ETSVPKSSTN GEQSETSASD  120
EKTPKKPDKV LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR  180
RKNKNFPATA SHYRHLMFPE GLQGATLNAP NGLHNAVLGN GAAVLTFGPD SPLCDTMASM  240
LNIAERAQSC VPNGFQATEP NSFVSYRKEE DGSTSGHSTG VSVATTSTSS HSGSHESVDK  300
RVEGFTPQLP YFPSGPWPYP MPPPTFCPPG YPLSFYTTPA YWGCMPPSWN NNISSISPQS  360
SVNNSVSVLT LGKHSRDGNI IAPSNSQREM HDMEHKSSEH NVLIPKTLRI DDPSEAAKSS  420
ISMWSKLGIK DDKAGSGGLF KAFPSSKGND MNHHMVEASP LLQANPAALS RSLTFREQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN28145.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528583.1	0.0	cyclic dof factor 2 isoform X1
Refseq	XP_028241473.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A0B2R3A5	0.0	A0A0B2R3A5_GLYSO; Cyclic dof factor 2 isoform A
TrEMBL	I1KMH1	0.0	I1KMH1_SOYBN; Uncharacterized protein
STRING	GLYMA07G35690.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-52	cycling DOF factor 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]