PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27996.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 456aa MW: 50255.3 Da PI: 6.7332

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27996.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	347	385	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L KHN27996.1 347 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 385 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.31E-7	346	389	No hit	No description
SuperFamily	SSF47459	1.83E-11	346	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0025	347	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-10	350	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MADDDQFQAS GNWWETSRSV RYESGASQSS SSAITNTGNN FGWQGSDMAD MKPRSSMDSS 60 SVVFHDTQNN KLQQPDSATS SDPNLHMMGL GLSSQAMDWN RASLLRGEKG TENSFRSMLQ 120 ENLSSSRTNF QHETGNMELS QQVQWRSEKI FSSESSTNEF KQVNRGGGFS LDQSQFSPQY 180 SSGDSTVTSQ GLPSSNFQID SSALYGTSSI LQGLLGPDHN NQTQQQPMSF PYHTTSYGLN 240 SNELVPSWSK VPQFLRASPP KPPPNNQLHF TNPATFWNAS EAANIKDVRP SFFPSLQPPF 300 STPNFEVQSK NISEVRESGT VVKKSGNEPA PKRTRNETPS PLPAFKVRKE KMGDRITALQ 360 QLVSPFGKTD TASVLSEAIE YIKFLHEQVT ALSTPYMKSG APIQIQQNSG KSKEAEGPKQ 420 DLRSRGLCLV PVSSTFPVTH ETTVDFWTPT FGGTPR

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MADDDQFQAS GNWWETSRSV RYESGASQSS SSAITNTGNN FGWQGSDMAD MKPRSSMDSS  60
SVVFHDTQNN KLQQPDSATS SDPNLHMMGL GLSSQAMDWN RASLLRGEKG TENSFRSMLQ  120
ENLSSSRTNF QHETGNMELS QQVQWRSEKI FSSESSTNEF KQVNRGGGFS LDQSQFSPQY  180
SSGDSTVTSQ GLPSSNFQID SSALYGTSSI LQGLLGPDHN NQTQQQPMSF PYHTTSYGLN  240
SNELVPSWSK VPQFLRASPP KPPPNNQLHF TNPATFWNAS EAANIKDVRP SFFPSLQPPF  300
STPNFEVQSK NISEVRESGT VVKKSGNEPA PKRTRNETPS PLPAFKVRKE KMGDRITALQ  360
QLVSPFGKTD TASVLSEAIE YIKFLHEQVT ALSTPYMKSG APIQIQQNSG KSKEAEGPKQ  420
DLRSRGLCLV PVSSTFPVTH ETTVDFWTPT FGGTPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27996.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-178	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006592891.1	0.0	transcription factor bHLH123 isoform X1
Refseq	XP_028192315.1	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	7e-87	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A445HTJ6	0.0	A0A445HTJ6_GLYSO; Transcription factor bHLH123 isoform A
TrEMBL	I1LUT6	0.0	I1LUT6_SOYBN; Uncharacterized protein
STRING	GLYMA12G34490.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]