PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN27934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27707.8 Da PI: 8.3322 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.2e-14 | 63 | 109 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P a kKl+Ka+ L ++++++k+L KHN27934.1 63 KNHSEAERRRRARINAHLDTLRSVIPGA-----KKLDKATLLGEVIRHLKDL 109 58*************************9.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.374 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-12 | 63 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-13 | 63 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-13 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-4 | 73 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.2E-5 | 148 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MEMEAFAPHR ISDGFQVSCG VIGNGYGSSS SLVLDKEKGE LVEAPVKLER KGVSPERSIE 60 ALKNHSEAER RRRARINAHL DTLRSVIPGA KKLDKATLLG EVIRHLKDLK TNAAQASEGL 120 MIPKDSDEIR IEEQEGGLNG FPYSIRASLC CEYKPGLLTD IRQALDALHL MIIRAEIATL 180 GGRMKNVFVI INCKEQNVED AEYRQFLAGS VHQALRSVLD RFSVSQDMLE SRKRRRISIF 240 SSSSIGDFL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 231 | 235 | RKRRR |
2 | 232 | 236 | KRRRI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN27934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539550.2 | 0.0 | transcription factor bHLH30 | ||||
Refseq | XP_028193458.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A445HT98 | 0.0 | A0A445HT98_GLYSO; Transcription factor bHLH30 | ||||
TrEMBL | K7LW62 | 0.0 | K7LW62_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G33751.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-31 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|