PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27923.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 356aa MW: 40758.6 Da PI: 7.7239

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27923.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.7e-11	188	231	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + KHN27923.1 188 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 231 899*********************************98777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-14	184	248	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.0E-9	185	233	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	186	238	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-11	188	242	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-11	188	239	No hit	No description
CDD	cd14703	1.22E-22	189	239	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAQLPPKIPN MSPSWPDFSS HQQKMQLPPL NNNGTITNNY HQHNQNPSWV DEFLDFSSAR 60 RGVHRRSVSD SITYLDSPVK CGGNKNNNNN ENEFDKFDDE QFMSMFTDEV VLSGVPLPPP 120 TTLSSSNPSS PYDQNFINDE KEKKEEHHHH HQLKNEADEV ESQCKQEIMQ LPNDTNTCSS 180 NERITDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL 240 LLNVDNSALK QRIAALAQDK IFKDAHQEAL KREIERLRQV YHQQSLKKME NAAGSPLPSP 300 KPISHQEALK REIERLRQVY YQQSLKKMEN AAGSPLPSPK PICDAQTEKE AQLLNA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAQLPPKIPN MSPSWPDFSS HQQKMQLPPL NNNGTITNNY HQHNQNPSWV DEFLDFSSAR  60
RGVHRRSVSD SITYLDSPVK CGGNKNNNNN ENEFDKFDDE QFMSMFTDEV VLSGVPLPPP  120
TTLSSSNPSS PYDQNFINDE KEKKEEHHHH HQLKNEADEV ESQCKQEIMQ LPNDTNTCSS  180
NERITDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL  240
LLNVDNSALK QRIAALAQDK IFKDAHQEAL KREIERLRQV YHQQSLKKME NAAGSPLPSP  300
KPISHQEALK REIERLRQVY YQQSLKKMEN AAGSPLPSPK PICDAQTEKE AQLLNA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27923.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096900	0.0	BT096900.1 Soybean clone JCVI-FLGm-25J24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028193426.1	0.0	basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-117	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A445HTF6	0.0	A0A445HTF6_GLYSO; Basic leucine zipper 61
STRING	GLYMA12G33600.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	5e-96	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]