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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
KHN27915.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 447aa MW: 49478.1 Da PI: 9.17 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN27915.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.5 | 0.00022 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k++ +s+ k H +t+
KHN27915.1 106 WRCEKCSKRYAVQSDWKAHSKTC 128
58*****************9998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MDDGEISNVF PHQNPSIAAS NNHDQPPILK RKRNLPGNPG KDQNLQLHRR GHNLPWKLKQ 60
RTSKEVRKRV YVCPEKTCVH HHPSRALGDL TGIKKHFCRK HGEKKWRCEK CSKRYAVQSD 120
WKAHSKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEQ TARVNAASNI SNYSIMQNPV 180
GSDMATHFSS FFKPNSCPDQ EPAPGNQTSN KGLSLWMTQT SQAHHETMVN NNNLHEFYQL 240
GSVTSPTAIY GTSGNPLASC SNPPPSNYQL NWVLGNKLST NGSHQELTST ASLPLVNNIV 300
KDNPNLQLIS VPSLYSSQHQ SHQTTSANMS ATALLQKAAQ IGTTSSDPSS LFLASIGLKC 360
NSPGQDGNKF CGMYGSSSVL TSHWSEAENN NNNNNNHNHS GDLSQMPPTK RLHVQNEESA 420
WGQTRDFLGV GAANHLPPFI NQRMDLS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
