PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27703.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 313aa    MW: 33658.2 Da    PI: 8.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27703.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011128150123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN27703.1 128 YECKTCSRTFPSFQALGGHRASH 150
                 99**********99999998887 PP
2zf-C2H213.20.00027219241123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KHN27703.1 219 HECSICGSEFTSGQALGGHMRRH 241
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-13127152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8127150No hitNo description
SMARTSM003550.11128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8214241No hitNo description
SMARTSM003550.019219241IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-11219243IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLAQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV AATTITTTTT AITAITTVMT  60
SSCSSASAGG GGSSSSTTFE EEEEDMANCL ILLAQGRVGR DPPHHHKDLC GDVKTEKGST  120
KVDHLYVYEC KTCSRTFPSF QALGGHRASH KKPKMEEKKL LSPPLLLPPL PASSSSLFNF  180
EEAKQSHMKN IISPSVSLQL GCGINKVGLN FHGNKSKIHE CSICGSEFTS GQALGGHMRR  240
HRASNNNNNI VQTTTTTTTT SNGAVDVKPR NVLELDLNLP APEDDLRDSK FQFPANPNSM  300
MLSAAPALVG CHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311500.0KT031150.1 Glycine max clone HN_CCL_170 C2H2-Zn transcription factor (Glyma12g30270.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304533.20.0C2H2-type zinc finger protein 3
RefseqXP_028192885.10.0zinc finger protein ZAT5-like
TrEMBLA0A0B2R6Z20.0A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5
TrEMBLI1LTN70.0I1LTN7_SOYBN; C2H2-Zn transcription factor
STRINGGLYMA12G30270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-54C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]