PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27670.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 269aa    MW: 30249.4 Da    PI: 9.5967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27670.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.9e-1663111255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++k  g+Wv+e+r+p++   ++r++lg++ t+e+Aa+a++  +++++g
  KHN27670.1  63 IYRGVRQRK--GKWVCELREPKK---TTRIWLGTYPTPEMAARAHDVGALAIRG 111
                 69***9987..*********853...5********************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1162111IPR001471AP2/ERF domain
CDDcd000181.59E-2962121No hitNo description
SuperFamilySSF541714.71E-1863121IPR016177DNA-binding domain
PROSITE profilePS5103220.17863119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2763120IPR001471AP2/ERF domain
SMARTSM003804.4E-2963125IPR001471AP2/ERF domain
PRINTSPR003676.4E-56475IPR001471AP2/ERF domain
PRINTSPR003676.4E-585101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNFEIESPFS FPIQSSSPIS QSSPCTAPNN NPNLISQLPS LSQLVSHKRK GGRKKFKETR  60
HPIYRGVRQR KGKWVCELRE PKKTTRIWLG TYPTPEMAAR AHDVGALAIR GTSAILNFPN  120
SVSLLPIANS LSSRKDIRAA AVEAAESLRP ISNSHHKKIS RKSKSTRAKK VPSLEETTKE  180
TVLDSSLHLK SMHSLLDREK CDVINSTSGT EKNNLDLSST MFFDEEALFN TPGLLDRMAE  240
SLDIFPLLPS MDYYWDDHAY CTDFNLWTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1450124377Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-108AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539460.30.0dehydration-responsive element-binding protein 1F
TrEMBLA0A0B2R1U90.0A0A0B2R1U9_GLYSO; Dehydration-responsive element-binding protein 1D
STRINGGLYMA12G30710.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1826166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-40C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]