PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28037.6 Da PI: 8.4636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 76 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +rWv+e+r+p +k+ r++lg++ t+e+Aa+a++ a ++l+g KHN27668.1 76 PVYRGVRQRN-GNRWVCEVREP---NKKSRIWLGTYPTPEMAARAHDVAVLALKG 126 68*****999.9******9998...347**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 76 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.496 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-26 | 77 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-29 | 77 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 77 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-7 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.12E-27 | 78 | 136 | No hit | No description |
PRINTS | PR00367 | 2.2E-7 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDVKMNKVES ESPYYNYSSS SSSSTSSQSQ LSLAFACNPN FSPDHSSLHA ETWKAGVLIS 60 HKRKAGRKKF RETRHPVYRG VRQRNGNRWV CEVREPNKKS RIWLGTYPTP EMAARAHDVA 120 VLALKGTSAL FNFPDSVSLL PVAKSSSAAD VRVAASKVST IFCPSYSSVT LSSSSPSNSR 180 VKTKPCLVDD FVKTENNVDE AKSVFFDEEA FYNMPLLLDS MAEGLLITPP SMKRAFDWDQ 240 VDCETDLTLW TD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00452 | DAP | Transfer from AT4G25470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27668.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-88 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193370.1 | 0.0 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | A2WZI4 | 2e-53 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-53 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A0B2R6U6 | 0.0 | A0A0B2R6U6_GLYSO; Dehydration-responsive element-binding protein 1F | ||||
STRING | GLYMA12G30740.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-47 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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