PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27531.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 357aa    MW: 40623.3 Da    PI: 7.1206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27531.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17165207145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W +eEd +l++a+k+ G++ W+ Iar+m+ gRt++ +k++w+
       KHN27531.1 165 KESWNEEEDRILIEAHKEVGNR-WAEIARRMP-GRTENTIKNHWN 207
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.702160214IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-18163212IPR009057Homeodomain-like
SuperFamilySSF466893.12E-15163215IPR009057Homeodomain-like
SMARTSM007171.2E-16164212IPR001005SANT/Myb domain
PfamPF002492.1E-15165207IPR001005SANT/Myb domain
CDDcd001677.40E-14167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
SFMEFDPIFP AEKIHFLSGI FSGIKSEIPV IPMSQENNNN TICMHQNNFN NHFQHLPLNE  60
PNHDHNHHHP TITKIFTEGS NSSILTPLFC LSSSSGYSYR NESLRGGFAN NNNNYKHSIM  120
PYAPNSTQNE PMHGPNRAIW DFSQKIPLQY SGAGASATSS QPHQKESWNE EEDRILIEAH  180
KEVGNRWAEI ARRMPGRTEN TIKNHWNATK RRLNAKRLRN KRRGLKGPTL LESYIRQVTA  240
NEETQKEMIK NSMSNMNLKG ESSSNTTTTN TNTNTNTRYP HLFRVWYESS EGGFSSEEDE  300
AGWSVQQPHG VGGGYVPMML NATVEDGTMG YDVAMEMAPE VQMKKEMDLM EMIIRKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A3e-18164212452MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A3e-18164212452MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548575.10.0transcription factor MYB62 isoform X2
RefseqXP_006599106.10.0myb-like protein A isoform X1
RefseqXP_028206905.10.0myb-like protein A isoform X1
RefseqXP_028206906.10.0transcription factor MYB62-like isoform X2
TrEMBLA0A445GFG00.0A0A445GFG0_GLYSO; Transcription factor MYB98
TrEMBLK7MFP50.0K7MFP5_SOYBN; Uncharacterized protein
TrEMBLK7MFP60.0K7MFP6_SOYBN; Uncharacterized protein
STRINGGLYMA16G07927.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-21myb domain protein 98
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]