PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27371.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 317aa    MW: 35527 Da    PI: 5.0599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27371.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13123174155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rr+h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  KHN27371.1 123 QRRTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 174
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-13121178No hitNo description
SuperFamilySSF474597.72E-17121193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.313122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-11123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14123187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYGCDKD YLYSLVEHNY GNFQAAEEEK VLLGIINNNI EHNFHANWDS  60
SSTSMLQNVK EQQWDSHSSP EACTVDQSMT TAPFPPPPSS SVEATVTATS RRSAKNTEEI  120
ENQRRTHIAV ERNRRKQMNE YLAVLRSLMP SSYVQRGDQA SIIGGAINFV KELEQLLQSM  180
EGQKRTNQAQ ENVVGLNGST TTPFAEFFTF PQYTTRGRTM AQEQKQWAVA DIEVTMVDSH  240
ANLKVLSKKQ PGQLMKIVVG LQSLMLSILH LNVSTLDDMV LYSISVKVED GCRLNTVDEI  300
AAAVNQLLRT IQEVTFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979370.0BT097937.1 Soybean clone JCVI-FLGm-22B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228444.10.0transcription factor bHLH96-like
SwissprotQ9C7T42e-93BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0B2R0A50.0A0A0B2R0A5_GLYSO; Transcription factor bHLH96
STRINGGLYMA04G10630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]