PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27342.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 322aa    MW: 34964.6 Da    PI: 7.7255
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27342.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702176.51.2e-541262816154
      DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskkelets 103
                   CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvp+++rr   +        ++ + + +askr r+l +sk+ +a+s++++s+a+++k+++ts
  KHN27342.1 126 RVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPVSHRRGGSNSGGD----HNDDDDGNASKRLRTLgSSKNVAATSHSSTSNATPTKSFDTS 220
                 47*******************************************96444333....233345566677777646677788899999999999999999 PP

      DUF702 104 s..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 s          lP++v+++avfrc rvs++  ge+e+aY ++v+i+GhvfkG+Lyd+G+++
  KHN27342.1 221 ScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYMATVHISGHVFKGFLYDHGADT 281
                 9999999999************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016231.7E-24127169IPR006510Zinc finger, lateral root primordium type 1
PfamPF051422.9E-52127280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.3E-22232278IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNMLGLRDLF LIAPTPSQLH HHQQHQHQNQ PISAEHHSNL PLPSQASLSV GLGIFPLLTV  60
PHTNDVHAQV QDCANNNTNN TNTNYWNLKM CGPTEVNSTR KGVMNMEDEG SNKQMMESEE  120
SGGEFRVCQD CGNRAKRDCS FRRCRTCCKG RGFDCSTHVK STWVPVSHRR GGSNSGGDHN  180
DDDDGNASKR LRTLGSSKNV AATSHSSTSN ATPTKSFDTS SCQQDAGFKQ SLPRHVRAPA  240
VFRCHRVSAI GSGEDEIAYM ATVHISGHVF KGFLYDHGAD TRNDVPSVSE LQLGNNGSGK  300
NTNRECSSAI GVPTSAYPAS VC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973460.0BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546717.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0B2R6B80.0A0A0B2R6B8_GLYSO; Uncharacterized protein
STRINGGLYMA15G37600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-47Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]