PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27215.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 262aa    MW: 29660.2 Da    PI: 6.4008
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27215.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-2086146257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 r+R+t+t+ ql++Le+ F +   +p++e+++e++++l    +++e++V +WFqNrRa+ k+
  KHN27215.1  86 RQRWTPTAMQLQILERIFDQgIGTPTKEKIKEITNELsqhgQISETNVHNWFQNRRARSKR 146
                 89*****************99**************************************97 PP
2Wus_type_Homeobox100.98.9e-3385148265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++it+eL+++G+i+++NV++WFQNr+aR+++kq
         KHN27215.1  85 SRQRWTPTAMQLQILERIFDQGIGTPTKEKIKEITNELSQHGQISETNVHNWFQNRRARSKRKQ 148
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.77182147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1682151IPR009057Homeodomain-like
SuperFamilySSF466893.51E-1784149IPR009057Homeodomain-like
SMARTSM003892.1E-1384151IPR001356Homeobox domain
PfamPF000466.7E-1886146IPR001356Homeobox domain
CDDcd000861.47E-1286148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVNAMEWQKQ RCWQPNRNAE MMCVKVMTDE QLEILRKQIA VYATICEQLI EMHKNISAHQ  60
DLAGIRLGNM YCDPLLGSGG LKIASRQRWT PTAMQLQILE RIFDQGIGTP TKEKIKEITN  120
ELSQHGQISE TNVHNWFQNR RARSKRKQQN VAPSANAESE VETEVDSKDK KTKPDEFQAP  180
PSVSAGPADN LGFQNHDSLQ YLNPESNKPD SVFPSDGTRN FHHVPAFDGL LSNSRSNYLT  240
GKLETPENYE LYQPAGDYNI AG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921890.0BT092189.1 Soybean clone JCVI-FLGm-10E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618603.10.0homeobox domain-containing protein isoform X1
RefseqXP_028201181.10.0WUSCHEL-related homeobox 8-like isoform X2
SwissprotO817886e-72WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0B2R0F60.0A0A0B2R0F6_GLYSO; WUSCHEL-related homeobox 13
STRINGGLYMA02G10410.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-74WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]