PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27214.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 265aa MW: 29961.9 Da PI: 7.2807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27214.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	169	200	24	55
HCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 24 rellPkaskapskKlsKaeiLekAveYIksLq 55 e++P+ ++ kK + a++L++A YIk Lq KHN27214.1 169 SEIIPPHKVTKIKKTDTASVLQEASLYIKLLQ 200 589999668999*****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
GANLPNMSEA SSYSIDIAKM RNALLSSVSS RFNCYGNDEA QFEILEGSMH MNDLIDFHIN 60 GFNMESRIFN NYSQLGQGVH TQPSQSQSLI YDYNHYPGSL FAIPSSKEIS QQSLLLDKDP 120 SQYEGVCGNA RKRPFEYTDN MSLWKKVKSN SKSKITIMEP KWHQAKEVSE IIPPHKVTKI 180 KKTDTASVLQ EASLYIKLLQ AQIRTLFQML SFTYFSTIND PHTQECADKL EVDLRSRGLC 240 LVPISITDKI TKVDQIHHAS ASINT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27214.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	2e-34	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574862.1	0.0	transcription factor bHLH110 isoform X2
TrEMBL	A0A0B2R4V0	0.0	A0A0B2R4V0_GLYSO; Transcription factor bHLH110 (Fragment)
STRING	GLYMA02G10420.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13355	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-11	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]