PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27209.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 169aa    MW: 18531.9 Da    PI: 9.0099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27209.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00143052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  KHN27209.1 30 FECKTCNRQFPSFQALGGHRASH 52
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-828100No hitNo description
PfamPF139122.7E-132954IPR007087Zinc finger, C2H2
SMARTSM003550.163052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
PfamPF139125.8E-1077102IPR007087Zinc finger, C2H2
PROSITE profilePS501579.07878105IPR007087Zinc finger, C2H2
SMARTSM003550.578100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MANCLMLLSR GGDQFEATYS SSTSMNNRVF ECKTCNRQFP SFQALGGHRA SHKKPRLMAG  60
DNIEGQLLHD SPPKPKTHEC SICGLEFAIG QALGGHMRRH RAANLNGNNV YNSATATSSS  120
SGGSSFDSSP KKKADNKRVL VLDLNLTPFE NDLEFLKIGK PTTFVDYLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912950.0BT091295.1 Soybean clone JCVI-FLGm-7L1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237020.21e-125C2H2-type zinc finger family protein
RefseqXP_028201252.11e-125zinc finger protein ZAT12-like
TrEMBLA0A445LLS61e-123A0A445LLS6_GLYSO; Zinc finger protein ZAT11
TrEMBLI1JDR71e-123I1JDR7_SOYBN; Uncharacterized protein
STRINGGLYMA02G10490.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-35C2H2 family protein