PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 28130.6 Da PI: 7.4022 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 83.4 | 2.1e-26 | 86 | 176 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+pkk+a ++ g +++ +++d+ r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F KHN27132.1 86 FQKELTPSDVGKLNRLVIPKKHAVSYfpyvggsadesG---SVDVEAVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFF 176 99****************************98765422...2467899*******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-30 | 83 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-27 | 84 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.94E-25 | 85 | 184 | No hit | No description |
Pfam | PF02362 | 1.0E-23 | 86 | 176 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-18 | 86 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.914 | 86 | 197 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAYDSASIKL RSGECHRNFP WNDQTVQEPQ FQSHYSAETV LNMIRDGTYP SKFATFLKTR 60 QTQKGVAKHI GLKGDDEEQF CCTQLFQKEL TPSDVGKLNR LVIPKKHAVS YFPYVGGSAD 120 ESGSVDVEAV FYDKLMRLWK FRYCYWKSSQ SYVFTRGWNR FVKDKKLKAK DVIAFFTWGK 180 SGGEGETFAL IDVIYNNNAE EDSKGDTKQV LGNQLQLAGS EEGEDEDGNI GKDFNAQKGL 240 RLFGVCIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-28 | 85 | 175 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27132.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028220508.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 2e-74 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A0B2R5L8 | 0.0 | A0A0B2R5L8_GLYSO; AP2/ERF and B3 domain-containing transcription factor | ||||
TrEMBL | A0A445FA59 | 0.0 | A0A445FA59_GLYSO; AP2/ERF and B3 domain-containing transcription factor | ||||
STRING | GLYMA20G39140.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 9e-77 | RAV family protein |
Publications ? help Back to Top | |||
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