PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27039.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 317aa    MW: 34670.8 Da    PI: 7.1072
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27039.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.87.1e-611122503154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100
                  g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqql a+++++++++ +++ skr+r++           +lss+      
  KHN27039.1 112 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLMALHQQQQEQQqQRDISKRPRDS-----------RLSSS---GLE 196
                 5789************************************************9999876655443266666666654...........22222...233 PP

      DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 e  ++P+ vss+a frcvrvs v+d+++ +aYqtavsigGhvfkGiLyd+G+e+
  KHN27039.1 197 EEGHFPSVVSSPAEFRCVRVSCVEDSDDRYAYQTAVSIGGHVFKGILYDYGPEN 250
                 4567************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-64114249IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-27116158IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.1E-25200248IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAGLFSLGGG GRGGDNQEEN NNQSSEIPPA ETLFWYSKND DVSSYHRGFE LWNQHQEHQH  60
HHHAMHHPHA RPLLQRDLYS SGVGPSRGGI SDDHSSSRSA AFVAMRAAGA EGGGISCQDC  120
GNQAKKDCPH MRCRTCCKSR GYDCQTHVKS TWVPASKRRE RQQQLMALHQ QQQEQQQQRD  180
ISKRPRDSRL SSSGLEEEGH FPSVVSSPAE FRCVRVSCVE DSDDRYAYQT AVSIGGHVFK  240
GILYDYGPEN SNNNNSNNNS NNYMAGETSA VAATAQPLNL AAAASSAALI DPSSLYSAPA  300
NAFMAGSGTQ FFPHTRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206238.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_028206239.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_028206240.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0B2R4980.0A0A0B2R498_GLYSO; Protein SHI RELATED SEQUENCE 7 isoform A
STRINGGLYMA16G24510.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-52SHI-related sequence 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]