PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27030.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 386aa MW: 42769.1 Da PI: 8.9296

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27030.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.1e-05	290	327	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++++L++l+ + +K s a++L +A+ YI+ L KHN27030.1 290 RKEKLGDRIQTLQRLVAPF-----GKTSTASVLSEAIGYIHFL 327 7788999*******998.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.585	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-5	288	332	No hit	No description
SuperFamily	SSF47459	1.96E-10	288	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	292	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEFASFHLQQ HQLQEESAQF SIISTTPPPD SKPSTTITNQ SWIPSNMYNG YNSGFLTDQS 60 FTNSRELQHK HAMTDSLRIS TRQAFGFNNG KSLITQHPVG DNNSLFPARI FKGEMIDNTF 120 MKAMEESSLV PIHHEPRYSS PSFLSSIGVT VGEEFYPNDK PIDGGTPSKR YNNSFGDVAL 180 ISNLPTLDMA SSLVSCSLGL NPKMFDLHTS YGGSCGIQPG YDTFGINESI SLSHSYEHGR 240 ENSPSNSTSK ISSFVSEVAT TKRPSNCSPP KESEAKAKKS RPSCPPLKVR KEKLGDRIQT 300 LQRLVAPFGK TSTASVLSEA IGYIHFLHQQ IQTLSIPYMK SAQSKPSRVV QLDSNKVDRR 360 EFKPDLRSRG LCLVPLSYAS FIHRCV

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEFASFHLQQ HQLQEESAQF SIISTTPPPD SKPSTTITNQ SWIPSNMYNG YNSGFLTDQS  60
FTNSRELQHK HAMTDSLRIS TRQAFGFNNG KSLITQHPVG DNNSLFPARI FKGEMIDNTF  120
MKAMEESSLV PIHHEPRYSS PSFLSSIGVT VGEEFYPNDK PIDGGTPSKR YNNSFGDVAL  180
ISNLPTLDMA SSLVSCSLGL NPKMFDLHTS YGGSCGIQPG YDTFGINESI SLSHSYEHGR  240
ENSPSNSTSK ISSFVSEVAT TKRPSNCSPP KESEAKAKKS RPSCPPLKVR KEKLGDRIQT  300
LQRLVAPFGK TSTASVLSEA IGYIHFLHQQ IQTLSIPYMK SAQSKPSRVV QLDSNKVDRR  360
EFKPDLRSRG LCLVPLSYAS FIHRCV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624011.1	0.0	uncharacterized protein LOC100785177 isoform X2
Refseq	XP_028206722.1	0.0	uncharacterized protein LOC114390220 isoform X2
TrEMBL	A0A0B2QZS6	0.0	A0A0B2QZS6_GLYSO; Transcription factor bHLH110
TrEMBL	K7MH48	0.0	K7MH48_SOYBN; Uncharacterized protein
STRING	GLYMA16G24661.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-36	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]