PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24255.2 Da PI: 6.2999 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 199.7 | 1.2e-61 | 6 | 163 | 2 | 165 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ +eq+CyvqC+fC+til+vsvP + l++vvtvrCGhCtsllsvn++kas +lla+ hl+ +++ +++ ++ ++++as + KHN26894.1 6 HLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASfvpfHLLASLTHLE--------PKEGASDDGANKSLNSYNNASIIT 96 7899**********************************************99977777777777743........333333333333344444444444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ +e++ ++++ v +PPekrqr Psaynrfikeei+r+k++nP+++h+eafs+aaknWa fP+ KHN26894.1 97 TNSDCEEENVTQISN--VVHKPPEKRQRTPSAYNRFIKEEIKRLKSENPNMAHKEAFSTAAKNWANFPP 163 443333444444443..478************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.2E-62 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.69E-10 | 110 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-6 | 114 | 165 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.73E-5 | 122 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSILSTVVT VRCGHCTSLL SVNMKKASFV 60 PFHLLASLTH LEPKEGASDD GANKSLNSYN NASIITTNSD CEEENVTQIS NVVHKPPEKR 120 QRTPSAYNRF IKEEIKRLKS ENPNMAHKEA FSTAAKNWAN FPPSQCDGEA DSCNGTEQLG 180 DLDSHEEPRD AIEVHKEGQG FRGRKAPRNS IWERAPFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26894.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025985248.1 | 1e-164 | axial regulator YABBY 4 | ||||
Refseq | XP_028245109.1 | 1e-164 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 1e-73 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0B2R3V0 | 1e-163 | A0A0B2R3V0_GLYSO; Axial regulator YABBY 4 | ||||
TrEMBL | K7L9I2 | 1e-163 | K7L9I2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G39290.2 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 6e-76 | YABBY family protein |
Publications ? help Back to Top | |||
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