PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26876.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 384aa    MW: 42907.1 Da    PI: 7.7164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26876.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-06297319729
                 HHHHHHHHHHHHHHHHHHCTSCC CS
         HLH   7 erErrRRdriNsafeeLrellPk 29 
                   Er+RR++i++++++Lr+l+P 
  KHN26876.1 297 VTERNRRNKIKKGLFTLRSLVPR 319
                 57********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-159151IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.8E-6283322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0012292325No hitNo description
PfamPF000102.4E-4297321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-5298337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSGLGVVECL RPLVKTNAWD YVVVWKYGDD PTRFIEWVGC CCRGSCSVNI DVVKPEEEKG  60
EVCNLAQSCR DDHFHFQHLV RTKACKALAQ LPFALSLYSG VHGEVAISQQ ARWLTQDSIG  120
TQVLIPIVGG LIELFTENLI PMDMNIIEFI TAHGCVSLEQ EAISAQSYTS LNINEHLPLR  180
EQYSHWSPHM PTLTPSVHQP ATRQCSSHPS IEGPSSGSNP STEEPSFDSK FASLIPHEYL  240
KPPVKKSPIP KTETPKYNKT SGKWQRGLSS HCSNEEDDES KSVKESQKEV YQAKNLVTER  300
NRRNKIKKGL FTLRSLVPRI TKVQVEVHHI SKTDFLIKLC SEQTQGGFSK LMEAIHSIGL  360
KVDSANMTTL DGKVLNILTA KVRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300307NRRNKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-159AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246309.10.0transcription factor bHLH90-like isoform X1
TrEMBLA0A0B2QYW90.0A0A0B2QYW9_GLYSO; Transcription factor ABORTED MICROSPORES
STRINGGLYMA08G39470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.17e-38bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]