PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 35725.4 Da PI: 4.7823 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 185 | 225 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++i ++ +eL +l+P +K++ ae+L A +Y+k Lq KHN26867.1 185 RERRRKITEKTQELGKLVPGG-----PKMNTAEMLHAAAKYVKFLQ 225 89*****************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.443 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-8 | 183 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-7 | 185 | 228 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-11 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 185 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-5 | 185 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MMALSTYSNC DTLQISNLET NTFHEAMPEE EVAAPNLQHF FSYLDESFFL SNTLLENYID 60 PTFGFLYPPG INHPYDPFTS LTSRDDIFPT HEDYNLLPCP KRKKCCYEEK QQHQEHVYSS 120 LQEITTPTLL SNLIDGFVVP YENCSSFQAE ELQQPVFYEV TQYGDPCVDL QCEKRGTKRP 180 ISPPRERRRK ITEKTQELGK LVPGGPKMNT AEMLHAAAKY VKFLQAQVGM LELMNILEED 240 KAEPPPENIH ALVVSPLVQE KLYTEERCFV PNGIVTTLTN HEDVHSRPTI LEDLKQLIGT 300 DIEKKQSKTK SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26867.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 4e-42 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586394.1 | 0.0 | transcription factor bHLH52 | ||||
Refseq | XP_028243019.1 | 0.0 | transcription factor bHLH52-like | ||||
TrEMBL | A0A445JFR6 | 0.0 | A0A445JFR6_GLYSO; Transcription factor bHLH52 | ||||
STRING | GLYMA08G17734.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 7e-30 | bHLH family protein |
Publications ? help Back to Top | |||
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