PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 34582.2 Da PI: 4.7034 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.7 | 1.5e-06 | 178 | 219 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++i ++ +eL +l+P +K++ ae+L A +Y+ +Lq KHN26866.1 178 ARERRRKITKKTQELGKLVPGG-----PKMNTAEMLHAAGKYVMYLQ 219 699*****************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-10 | 168 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.185 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 172 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.19E-5 | 175 | 222 | No hit | No description |
SMART | SM00353 | 4.7E-7 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-4 | 179 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MALSTYFNFE TLQIPNLETN TFHEAMPEEV AAPNLQQLFP YSDESFFLSD ALFENYIDPT 60 GGFLYPPDVN PPYDGDIFPT HKDYKLLPCS KRQKCCYEEQ QRQQEHVYSS SLQEFTTPTL 120 PSSFLDGFVI PYDNCCSLQA EELQQKLFSE TQYGDTCVDL PCEKKGNERT ISPQSVAARE 180 RRRKITKKTQ ELGKLVPGGP KMNTAEMLHA AGKYVMYLQA QVGMLELMNT LEEDKAEPPP 240 ENLHALVASP FVQEKLYTEE RCFVPKEVVT TLTNHKDVQS RPTILKDLKQ LIGTDIEKKA 300 KQE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26866.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 6e-35 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586395.1 | 0.0 | transcription factor bHLH52 | ||||
Refseq | XP_028243023.1 | 0.0 | transcription factor bHLH52-like | ||||
TrEMBL | K7L760 | 0.0 | K7L760_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G17747.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 9e-31 | bHLH family protein |
Publications ? help Back to Top | |||
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