PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26808.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 562aa    MW: 65464.7 Da    PI: 8.8346
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26808.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.41.1e-1315100191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y ++A++ GF+v +++sk +++ ++  +   vCs+  ++++++       ++  +t+t+Cka+++  +  dgk +v ++ l+HnHel+p
  KHN26808.1  15 NYYTNFAQHKGFEVYRRTSKMEEDGKKYFTLACVCSRRSENKRSHLL-----NPYLVTKTQCKARINACLCLDGKIRVLSVALDHNHELCP 100
                 69*******************99999999999999998888887766.....9************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-1115100IPR004330FAR1 DNA binding domain
PfamPF105513.0E-33220314IPR018289MULE transposase domain
PROSITE profilePS5096610.188504542IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5514538IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
PKVGMTFPSE QEIFNYYTNF AQHKGFEVYR RTSKMEEDGK KYFTLACVCS RRSENKRSHL  60
LNPYLVTKTQ CKARINACLC LDGKIRVLSV ALDHNHELCP GKARLIKYTK KSKPQRKRKH  120
DLSNLAGING DGSIQSPGVE AGEHGSLGFF DKNRRIFIQK ASSLRFESGD AEAIQSYFVR  180
MQKINSSFYY VMDLDDDCRL RNVFWADARS KAANEYFGDV VTFDTTYLTN KYNIPLALFL  240
GVNHHGQSVL LGIALLSNED AETFTWLFQT WLACMSTGHA PIAIITREDR AIKTAIEIVF  300
PKARQRWCLS HIMKRVSEKL RGYPRYESIK TDFDGAVYDS FSKDDFNESW KKLIYSHNLH  360
DNEWLNSLYN ERHRWVPVYV KDTFWAGMST IDRNESVHAF FDGYVCSKTS LKQFFKQFDN  420
AMKDKVEKEC LADFNSFNNL IPCRSHFGIE YQFQKVYTNG KFKEFQEEVA CIMYCNAAFE  480
KKEGLVSAYS VVESKKIQEA IKYVTFNVQF NEEDFEVQCE CHLFEFKGIL CRHILSLLKL  540
IRKTESVPSK YVFSHWRKDL KR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532941.20.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_006585429.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634530.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634531.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634532.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_028244133.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244134.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244135.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244136.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244137.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244139.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445JFW40.0A0A445JFW4_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A
TrEMBLK7L7930.0K7L793_SOYBN; Uncharacterized protein
STRINGGLYMA08G18380.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-110FAR1-related sequence 6