PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26747.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1162aa    MW: 130524 Da    PI: 6.2204
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26747.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.73.6e-561222364118
        CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102
                  ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK+g+v+vl+cyYah+een++fqrr+yw+L
  KHN26747.1 122 AQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKIGSVDVLHCYYAHGEENENFQRRSYWML 220
                 49************************************************************************************************* PP

        CG-1 103 eeelekivlvhylevk 118
                 e ++ +iv+vhylevk
  KHN26747.1 221 EPDMMHIVFVHYLEVK 236
                 *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.644115241IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-80118236IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-50121235IPR005559CG-1 DNA-binding domain
PfamPF018335.0E-5580655IPR002909IPT domain
SuperFamilySSF812961.23E-14580665IPR014756Immunoglobulin E-set
PROSITE profilePS5029720.102762873IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-20763874IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-21767873IPR020683Ankyrin repeat-containing domain
CDDcd002042.87E-16768871No hitNo description
SMARTSM002481100779808IPR002110Ankyrin repeat
PROSITE profilePS500889.084779811IPR002110Ankyrin repeat
PfamPF127961.5E-7784874IPR020683Ankyrin repeat-containing domain
SMARTSM002483.5E-4812841IPR002110Ankyrin repeat
PROSITE profilePS5008810.606812844IPR002110Ankyrin repeat
SMARTSM002481900851880IPR002110Ankyrin repeat
SMARTSM000150.279851007IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.25E-79861036IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.4079861015IPR000048IQ motif, EF-hand binding site
PfamPF006120.00359881006IPR000048IQ motif, EF-hand binding site
SMARTSM000150.002610081030IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.3410091033IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-410111030IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MAEGASYGLR RSLGKAAVST VLASFYGLFY CKILLNCNFP GPRFHNLWHL HLPLDQTLAC  60
FTSSQSCSCL LCHCHITLVF FFFLPSSAVP CVLCLTSVLI TSIFFCGSAS LILYIQQLQF  120
EAQHRWLRPA EICEILRNYR MFHITSEPHN RPPSGSLFLF DRKVLRYFRK DGHNWRKKKD  180
GKTVKEAHEK LKIGSVDVLH CYYAHGEENE NFQRRSYWML EPDMMHIVFV HYLEVKGNKN  240
IVVNTEGDEI PSDSQKVTSS SSSLPTHHSS VPSLSTDSVS PTTSLMSLRE DADSEDIHQA  300
SSGLRPLYES QHSGNGPLTE KIGAGSNSSY LIHPFSGNDT AYIDGQKTHD VATWSTVLQS  360
TAKLHNDPSL ASSPSIPSSS MGDVLEQEHT IFSDLLMSKS GLTEVAESSQ SLQSNWQIPF  420
EDNSGGMPML TQTQTFGLQF RSDYGTGLLG NETRNACSES AAILYSFNGE PKEQPMQQNY  480
LQELEDGQSQ HALKSNSANK VPDEETINYG LTVKSTLLDR DESLKKVDSF SRWITKELGE  540
VADLNMQSSP GISWSTDECQ HVIDDTSLSP SLSQDQLFSI NDFSPKWAYA ESEIEVLIIG  600
SFLKSQPEVT TCNWSCMFGE VEIPAKVLAD GILCCQAPRH KVGRVPFYVT CSNRLACSEV  660
REFDFREGFA RNVDFADFYN SSEILLHLRL EDFLSLKPVD PSNHSFEGDM EKRNLIFQLI  720
SLREVEEYSI KDEVTTELDI SQHMVKEHLF HKQFKEKLYS WLLHKVTESG KGPNVLDEDG  780
QGVLHLAAFL GYDWAINPII SAGVNINFRD VNGWTALHWA ASCGRERTVA VLVSMGADCG  840
ALTDPSPSSP AGRTAADLAS SYGHKGISGF LAESSLTHHL ETLTMDDQKG GRQEISGMKA  900
VQTVSERSAT PVHFGDMPDL CLKDSLTAVR NATQAADRIH QVYRMQSFQR KQLTQYESDE  960
LGLSDQQALS LLASRACKSG QGDGLANAAA VQIQKKFRGW KKRKEFLMIR QRVVKIQAHV  1020
RGHQVRKQYK PIIWSVGILE KIILRWRRKG SGLRGFRPNV INEVPDQQNN SLKEDDYDYL  1080
KEGRKQKEEK IQKALSRVKS MVQYPEARAQ YRRLLNVVED FRQTKASNEG LINSEETVDG  1140
MEDLIDIDML LDDDNFIPIA FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A1e-1176887358157ank3C2_1
5hry_B1e-1176887358157ank3C2_1
5hry_C1e-1176887358157ank3C2_1
5hry_D1e-1176887358157ank3C2_1
5hry_E1e-1176887358157ank3C2_1
5hry_F1e-1176887358157ank3C2_1
5hry_G1e-1176887358157ank3C2_1
5hry_H1e-1176887358157ank3C2_1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26747.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244209.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A445JG930.0A0A445JG93_GLYSO; Calmodulin-binding transcription activator 2 isoform A
STRINGGLYMA15G05900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]