PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 472aa MW: 53482.7 Da PI: 6.9408 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 119 | 209 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k l++s+v + ++ lp +f+++h + +++t +ledesg+++ k+i +k++ l++GW++F ++L egD+vvF+l++ ++f +v ++r+ KHN26467.1 119 FVKSLVRSHVASCFWMGLPVSFCKRHLPD--KDTTFILEDESGKEYMTKYIACKTG----LSAGWRQFSAVHKLHEGDVVVFQLVEPTKF--KVYIIRA 209 89************************534..5679***************777776....***********************9876666..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-22 | 112 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-23 | 113 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.10E-26 | 117 | 208 | No hit | No description |
SMART | SM01019 | 4.0E-23 | 119 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-16 | 119 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 119 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MVVIDEKNRV IRRDMVELSQ HDQSVTVAYY GEELHGGVPL PRFSRMSPLN TDRQNKGMEN 60 KYKLLNSPVK QATPAEAQKF ASSIKVATEG TSSRGQAMSS AVLQAEEVQS NLEREFPSFV 120 KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT TFILEDESGK EYMTKYIACK TGLSAGWRQF 180 SAVHKLHEGD VVVFQLVEPT KFKVYIIRAN NTRELDGAFL SLDSNDNADS DDVACNNSKR 240 KHGKSVQQDV QTKKKASASR LRPKARPSVE QSENDSEEAL SEVMEGFKML EFNDVKGFEN 300 FSIIVDGVPI DAEFSTEVRN KYYRLCCSQH AFLHENLIKG MNYKLIAGII LETVNIADAI 360 EVSVICTPRA EFSNWDKTLL AFEHLGMDVE FLRVRLRRLA RIAYEKDDAS ETKKHLAYRN 420 EYSRADDEIK NMEAKLEELK GACNGFGAYL ESLKCRAESN HIKFQKEVVA PW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26467.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551033.1 | 0.0 | B3 domain-containing protein Os01g0234100 | ||||
Refseq | XP_028211409.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A0B2R3K1 | 0.0 | A0A0B2R3K1_GLYSO; B3 domain-containing protein | ||||
STRING | GLYMA17G20175.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-35 | B3 family protein |
Publications ? help Back to Top | |||
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