PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26421.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 514aa    MW: 56855.4 Da    PI: 4.7038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26421.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-173582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed llv++v+++G g+W+ + ++ g+ R++k+c++rw ++l
       KHN26421.1 35 KGPWTAAEDALLVNYVQKHGEGNWNVVQNYSGLSRCGKSCRLRWANHL 82
                     79******************************************9986 PP
2Myb_DNA-binding49.59.5e-1688131146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+  ++++++++G++ W++ a++++ gRt++++k++w++
       KHN26421.1  88 KGAFTAEEERMIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 131
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7383082IPR017930Myb domain
SuperFamilySSF466891.05E-3034129IPR009057Homeodomain-like
SMARTSM007176.4E-153484IPR001005SANT/Myb domain
PfamPF002491.7E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-233689IPR009057Homeodomain-like
CDDcd001673.47E-113782No hitNo description
PROSITE profilePS5129424.11783137IPR017930Myb domain
SMARTSM007173.8E-1687135IPR001005SANT/Myb domain
PfamPF002498.4E-1588131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2590136IPR009057Homeodomain-like
CDDcd001671.43E-1190131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSQMTNEVDN NVHYDDQTGS QLNDDGNGVG VVLKKGPWTA AEDALLVNYV QKHGEGNWNV  60
VQNYSGLSRC GKSCRLRWAN HLRPNLKKGA FTAEEERMIA ELHAKMGNKW ARMAAHLPGR  120
TDNEIKNYWN TRMKRRRRAG LPLYPPEVLL QAFQERKHGQ GTGEISDGDG GHRDFLKKNN  180
YEIHDAIFDS LKENQGILPF LPDLPAISAN SFLPNGLGSP PYCNLLPSTL PNHDHLQEST  240
MSFIGSSELN SNRFYPFDHI KDNTSDKISE SFGLYSPLDR GVSHGSICYS HSLSNGNSST  300
SKPTSEAVKS ELPSLQIPET EFGSWGTSPP PPLNESLDVF IHSPQPPNAL DSGSSSPLNS  360
GLLDALLYQA NTLGCSKNNS SDKSSNSSIA TPGDRAECSA LNMYETEWED YADPLSPFGA  420
TSILNEHPVV STNGNSWDEW ELFQTFSENS ADNNERLQSI DQVWTPKSEN QSMSLLNFTL  480
PDVLITSDWH ELYSDHDSTN QAIMTEASDD ISGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-31321361104C-Myb DNA-Binding Domain
1msf_C4e-31321361104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1871650.0AC187165.17 Glycine max cultivar Williams 82 clone gmw2-91b16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238354.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A0B2QXM00.0A0A0B2QXM0_GLYSO; Transcription factor GAMYB
STRINGGLYMA06G47000.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-90myb domain protein 33
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]