PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26380.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 401aa    MW: 45202.8 Da    PI: 8.5783
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26380.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31251305155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt+ hvkSHLQkYR+
  KHN26380.1 251 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRI 305
                 68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.77248308IPR017930Myb domain
SuperFamilySSF466891.97E-17249305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28249306IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23251306IPR006447Myb domain, plants
PfamPF002491.4E-9255304IPR001005SANT/Myb domain
PfamPF143792.8E-19336382IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MNENKIDWGG LIQQSHGLSG DFNSEFGNRY CQYFDIRQAW NMGPLSMFGG EATDHELPNI  60
GHVKSSGTIM SRFESPASAF YATENCMGFA EYDCQVGVHS LSSQLCKIND LEFPLYQSFS  120
RENLFLDSAN QSETNFDLSN TLQSIVKSQL NSGNQCRRSP EKSNQISSGN FPSSKFLPIE  180
QQKLFVDGLI RGSSFLKKGN QDHMVGHGSF NLSVPQLRFS SQIEKLYPTL SAGSVSTIGN  240
SASNGAIVSS KTRIRWTKDL HEKFVECVNR LGGAEQATPK AILKMMNTDG LTIFHVKSHL  300
QKYRIAKFIP EPSHGKSDKR THTKDVHHLD VKTGLQIREA LKLQLDAQRR LHEQLEIQRK  360
LQLRIEEQGR ELKKMFDQQQ KTNNNLPNTQ NSATDETTIN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312050.0KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237074.20.0MYB-CC domain-containing transcription factor PHR31
RefseqXP_028216362.10.0uncharacterized protein LOC114398374
TrEMBLA0A0B2QXV30.0A0A0B2QXV3_GLYSO; Myb family transcription factor APL
TrEMBLI1N9740.0I1N974_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA19G32850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-68G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]