PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 359aa MW: 38546.7 Da PI: 9.264 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137.1 | 5.2e-43 | 69 | 145 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ KHN26375.1 69 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPSVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 145 6**************************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-35 | 63 | 131 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 67 | 144 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-41 | 68 | 149 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-33 | 70 | 143 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MASDAKLSSS ESLNGLKFGQ KIYFEDVGLA TPATSLTSSS SSSSAATVTS SSSSRKGRGG 60 SVQPAQPPRC QVEGCKVDLS DAKAYYSRHK VCGMHSKSPS VIVAGLQQRF CQQCSRFHQL 120 PEFDQGKRSC RRRLAGHNER RRKPPTSSLL TSRYARLSSS AFDNSGRGSN FLMELTSYPK 180 LSLRNSLPTP RSSELAPGNQ TSTLSWNGNS ETSSDLFLQG SVGGTSFASP GHPPGESYIG 240 VTDTSCALSL LSNQTWGSRN TAPSLGLSNM INFNGTPLTQ LAASSHGASI HQLPNTSWFF 300 KGIDSGNCSP EVVPDLGLGQ ISQPLNSQLH GELDLSQQGR RHYMDLEQSR AYESAHWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 70 | 143 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553428.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
Refseq | XP_028215958.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A0B2QXU8 | 0.0 | A0A0B2QXU8_GLYSO; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | I1N969 | 0.0 | I1N969_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-68 | squamosa promoter binding protein-like 9 |
Publications ? help Back to Top | |||
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