PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26357.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 383aa    MW: 42213.7 Da    PI: 9.789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26357.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-13311356655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR+ri +++ +L+el+P+     +k  s ae+L +Av+YIk+Lq
  KHN26357.1 311 SIAERVRRSRISERIRKLQELVPNM----DKQTSTAEMLDLAVDYIKDLQ 356
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16308371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-5309358No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14310368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSNSRYQVQ QQHQHNSGLL RFRSAPPANL KQQGEAANNN GSAWEGSEPL LRFLNSGDTH  60
DTTSSPTLRE FVDNKVSNNS KPAKESSSPL SRMNSQQGYS TSMLPSRSTV TSAMMLGSMG  120
KNQSAKSFDS NLLRQSSFPA GHFSNNISFQ NGYDTMKGVG NYSGVNGNDG ELSLSMNRMK  180
NQISFSSISP SSSLGVLSPT SKIGTEGIRV TSTEDGRQGG SNGDARYFGP GFSYASWNEP  240
SHHKRQRSSN DELLSDSQDG ELGNQVQTLS HHLSLPRTSS DMFAMDSLLQ FSDSVPCKIR  300
AKRGFATHPR SIAERVRRSR ISERIRKLQE LVPNMDKQTS TAEMLDLAVD YIKDLQKEFK  360
TLNDKRAKCK CINMQKSEAD QVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554190.10.0transcription factor bHLH130 isoform X1
RefseqXP_014627622.10.0transcription factor bHLH130 isoform X1
RefseqXP_014627623.10.0transcription factor bHLH130 isoform X1
RefseqXP_014627624.10.0transcription factor bHLH130 isoform X1
RefseqXP_014627625.10.0transcription factor bHLH130 isoform X1
RefseqXP_028218855.10.0transcription factor bHLH130-like
RefseqXP_028218856.10.0transcription factor bHLH130-like
RefseqXP_028218857.10.0transcription factor bHLH130-like
RefseqXP_028218858.10.0transcription factor bHLH130-like
RefseqXP_028218859.10.0transcription factor bHLH130-like
TrEMBLA0A0B2R3B40.0A0A0B2R3B4_GLYSO; Transcription factor bHLH130
TrEMBLI1N9480.0I1N948_SOYBN; Uncharacterized protein
STRINGGLYMA19G32600.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-60bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]