PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 41274 Da PI: 8.5854 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.8e-13 | 306 | 351 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq KHN26292.1 306 SIAERVRRTRISERMRKLQELVPHM----DKQTNTADMLDLAVEYIKDLQ 351 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.831 | 300 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-16 | 303 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-12 | 304 | 353 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-15 | 305 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-10 | 306 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-11 | 306 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDSHIHHHQS YQQQNQPSSG LLRFRSAPSS LLSNLTPSFV SEDFGSSSFR ELEGNNNKGC 60 SKDLSSMNSH KGVYGGGLPP HYPRHGSSSS TSSSAMEGSY GMVSSMGLDH EAPHKGFGSS 120 LLRQSSSPAG LFSNNNISFQ NGFATMKGVG NYGAVNGSNG ELSPCINRLK NQVSFSPRNA 180 SSLGMLSQIS ELGSEDIEAT SPDDDTKHGG NDTQHYGPGF PFGSWNDTPQ LSENISGLKR 240 GRSGNEKMFS DVQNGELANQ VNMLSHHLSL PKTSAEMITM EKLLQFPDSV PCKIRAKRGC 300 ATHPRSIAER VRRTRISERM RKLQELVPHM DKQTNTADML DLAVEYIKDL QKQFKTLSEK 360 RANCKCISMP KADTNQIA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 9e-84 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519049.1 | 0.0 | transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 2e-89 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A0B2R364 | 0.0 | A0A0B2R364_GLYSO; Transcription factor bHLH130 | ||||
TrEMBL | I1JG31 | 0.0 | I1JG31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G29830.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5177 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-90 | bHLH family protein |
Publications ? help Back to Top | |||
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